How to install NVIDIA CUDA 6 (and compile all the samples) in Debian Testing x86_64

Debian is not among the GNU/Linux distribution officially supported by the NVIDIA CUDA SDK 6.0 installer. The installation is nevertheless possible and quite straightforward. However, compiling the samples requires a bit of code hacking. Here is how ...

blog, prosciens, software / 07-22-2014 / Comments Off on How to install NVIDIA CUDA 6 (and compile all the samples) in Debian Testing x86_64

Nanoxia Deep Silence 6: A non-comprehensive review

We have recently purchased a Nanoxia Deep Silence 6 case in order to test its noise damping capabilities. A few days ago, we have completed the migration of one of our workstations. The bottom line is: The case is great. We do not intent ...

blog, hardware, prosciens / 03-05-2014 / Comments Off on Nanoxia Deep Silence 6: A non-comprehensive review

A useful script for AutoDock4 and Vina that merges flexible and rigid PDBQT output

AdutoDock and AutoDock Vina are popular programs for molecular docking developed by the Molecular Graphics Lab at The Scripps Research Institute. From AutoDock4 it is possible to allow certain side-chain flexibility to the residues of the binding ...

blog, prosciens, software / 02-01-2014 / Comments Off on A useful script for AutoDock4 and Vina that merges flexible and rigid PDBQT output

GPU computing

At Prosciens we are equipped with High Performance Computing (HPC) workstations. A typical configuration consists of 2 quad-core Intel Nehalem processors, 64 GB of RAM memory, one Nvidia Quadro FX 4800 graphics card and 3 Nvidia Tesla C1060 ...

blog, hardware, prosciens / 02-01-2014 / Comments Off on GPU computing